MRIQC: individual T1w report

Summary

Subject ID: 042_ExercisePre.
Date and time: 2018-05-06, 22:12.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.273618380929872
cnr			4.703721965298806
efc			0.5748118548334211
fber			103.35131072998047
fwhm	avg		4.045223333333333
fwhm	x		3.90863
fwhm	y		4.39769
fwhm	z		3.82935
icvs	csf		0.20573432726810123
icvs	gm		0.44764395723247263
icvs	wm		0.34662171549942616
inu	med		1.068211555480957
inu	range		0.3115203231573105
qi	1		0.0
qi	2		0.0023846417067090184
rpve	csf		24.30865658357439
rpve	gm		12.278936550368613
rpve	wm		18.7585257706701
size	x		180
size	y		256
size	z		256
snr	csf		2.655066972630816
snr	gm		10.669456612609201
snr	total		11.14335058468862
snr	wm		20.10552816882584
snrd	csf		15.576685794552949
snrd	gm		32.79969042540665
snrd	total		33.460251686674546
snrd	wm		52.00437884006403
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.8805881674608838
summary	bg	mad	12.597851753234863
summary	bg	mean	49.85059356689453
summary	bg	median	48.29456329345703
summary	bg	n	2606364.0
summary	bg	p05	30.46491813659668
summary	bg	p95	74.78659248352051
summary	bg	stdv	13.989479064941406
summary	csf	k	-0.10858025485313805
summary	csf	mad	125.48231506347656
summary	csf	mean	301.0760803222656
summary	csf	median	299.5296630859375
summary	csf	n	15536.0
summary	csf	p05	129.12244415283203
summary	csf	p95	484.6630096435547
summary	csf	stdv	112.81072235107422
summary	gm	k	0.11508538798192625
summary	gm	mad	58.4039306640625
summary	gm	mean	630.2451782226562
summary	gm	median	630.7169799804688
summary	gm	n	37928.0
summary	gm	p05	531.8061706542969
summary	gm	p95	726.3871398925781
summary	gm	stdv	59.11347579956055
summary	wm	k	1.0472431185020588
summary	wm	mad	42.64164733886719
summary	wm	mean	996.0865478515625
summary	wm	median	1000.0108032226562
summary	wm	n	186737.0
summary	wm	p05	902.8346313476562
summary	wm	p95	1069.862890625
summary	wm	stdv	49.73796844482422
tpm	overlap	csf	0.20327045023441315
tpm	overlap	gm	0.5247706770896912
tpm	overlap	wm	0.5417400598526001
wm2max			0.56111045770147

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	59270a0bb35ec90356f131370fe27aba
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.