MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.273618380929872
cnr4.703721965298806
efc0.5748118548334211
fber103.35131072998047
fwhmavg4.045223333333333
fwhmx3.90863
fwhmy4.39769
fwhmz3.82935
icvscsf0.20573432726810123
icvsgm0.44764395723247263
icvswm0.34662171549942616
inumed1.068211555480957
inurange0.3115203231573105
qi10.0
qi20.0023846417067090184
rpvecsf24.30865658357439
rpvegm12.278936550368613
rpvewm18.7585257706701
sizex180
sizey256
sizez256
snrcsf2.655066972630816
snrgm10.669456612609201
snrtotal11.14335058468862
snrwm20.10552816882584
snrdcsf15.576685794552949
snrdgm32.79969042540665
snrdtotal33.460251686674546
snrdwm52.00437884006403
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.8805881674608838
summarybgmad12.597851753234863
summarybgmean49.85059356689453
summarybgmedian48.29456329345703
summarybgn2606364.0
summarybgp0530.46491813659668
summarybgp9574.78659248352051
summarybgstdv13.989479064941406
summarycsfk-0.10858025485313805
summarycsfmad125.48231506347656
summarycsfmean301.0760803222656
summarycsfmedian299.5296630859375
summarycsfn15536.0
summarycsfp05129.12244415283203
summarycsfp95484.6630096435547
summarycsfstdv112.81072235107422
summarygmk0.11508538798192625
summarygmmad58.4039306640625
summarygmmean630.2451782226562
summarygmmedian630.7169799804688
summarygmn37928.0
summarygmp05531.8061706542969
summarygmp95726.3871398925781
summarygmstdv59.11347579956055
summarywmk1.0472431185020588
summarywmmad42.64164733886719
summarywmmean996.0865478515625
summarywmmedian1000.0108032226562
summarywmn186737.0
summarywmp05902.8346313476562
summarywmp951069.862890625
summarywmstdv49.73796844482422
tpmoverlapcsf0.20327045023441315
tpmoverlapgm0.5247706770896912
tpmoverlapwm0.5417400598526001
wm2max0.56111045770147

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum59270a0bb35ec90356f131370fe27aba
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.